-i The name of the input 2D spectrum from which you wish to extract a 1D spectrum.
-o The name of the output table, which will contain the 1D spectrum in units of electrons per second.
-b The name of the mask file that goes with the input 2D spectrum.
-fix This controls if the NaNs should be replaced with approximated values before doing extraction. A value of 0 means “don’t replace”, while an integer, N, means that for each NaN pixel, the N rows above and N rows below are averaged column by column within the order, and then a line is fit to these column averages to approximate the NaN. Default is 2.
-nanDrop Wavelength bins with NaNs will be removed from the output spectrum if this is set to 1. Default is 0, with the NaN fluxes set to -9999.
-f Fatal bit pattern for BMasks. See Appendix B for the allowed values and a description of how to calculate the fatal bit pattern. See §1.6 for the mask bit definitions. Default = 16384.
-e The name of the uncertainty file that goes with the input 2D spectrum.
-r The name of the output table from running the Ridge module in the previous step.
-ord This refers to the spectral order, and is used for low-resolution extractions only. You can set this to:
· 0 (as targeted; default)
· 1
· 2 (2+bonus)
· 99 (1+2+bonus)
-p The name of the *psf_fov.tbl calibration table which codes the order to be extracted for each FOVID, the default ridge location, and the extraction aperture width at a fiducial wavelength.
-height1 Sets the wavsamp height. Set to 1 to force the wavsamp height to be 1 pixel; set to 0 to use actual height. Default = 0.
-w Width (in pixels) of the extraction aperture at the reference wavelength. Default for HI-RES is to use full width of the order, and for LO-RES to use the value given in the psf_fov table (specified with the "-p" flag).
-l Reference wavelength (in microns) of the aperture width specified with the "-w" flag. A value of 0 selects a constant width extraction aperture. Default is to to use the value given in the psf_fov table specified by the "-p" flag.
-full Extraction type; 0 = sub_slit and 1 = full_slit. Default is sub-slit if all of the following are true: (a) the "-w" flag is not explicitly set, (b) this is not a HI-RES observation, (c) this is not a LO-RES center position observation.
-over Name of output overlay file.
-norm Normalize the fluxes. Default = 0:
· 0 = no normalization
· 1 = divide by height of wavsamp rectangle
· 2 = divide by area of wavsamp rectangle
For S18.7 and later, set this to 1 for SL,LL,LH and 0 for SH.
For S17.2, set this to 1 for LH and 0 for SL,LL,SH.
Set this to 0 for all previous CAL_SET versions.
-v Level of verbosity. Default = 1
-n Name of a namelist file listing all the input parameters. This can be used instead of specifying all of the flags on the command line. Default is namelist.nl.
